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Environmental Remediation Sciences Program

Publications

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Following is a 2008 listing of publications. For the full list of ERSP publications (including addresses, abstracts, keywords, and references cited), please download the Endnote file above.

  1. Akob, D. M., H. J. Mills, T. M. Gihring, L. Kerkhof, J. W. Stucki, A. S. Anastacio, K. J. Chin, K. Kusel, A. V. Palumbo, D. B. Watson, and J. E. Kostka. 2008. Functional diversity and electron donor dependence of microbial populations capable of U(VI) reduction in radionuclide-contaminated subsurface sediments. Applied And Environmental Microbiology 74:3159-3170.

  2. Baldwin, B. R., A. D. Peacock, M. Park, D. M. Ogles, J. D. Istok, J. P. McKinley, C. T. Resch, and D. C. White. 2008. Multilevel samplers as microcosms to assess microbial response to biostimulation. Ground Water 46:295-304.

  3. Bank, TL; Kukkadapu, RK; Madden, AS; et al. Effects of gamma-sterilization on the physico-chemical properties of natural sediments CHEMICAL GEOLOGY, 251 (1-4): 1-7 JUN 1 2008.

  4. Boonchayaanant, B., P. K. Kitanidis, and C. S. Criddle. 2008. Growth and cometabolic reduction kinetics of a uranium- and sulfate-reducing Desulfovibrio Clostridia mixed culture: Temperature effects. Biotechnology And Bioengineering 99:1107-1119.

  5. Bradley, P. M., F. H. Chapelle, and F. E. Loffler. 2008. Anoxic mineralization: Environmental reality or experimental artifact? Ground Water Monitoring and Remediation 28:47-49.
  6. Cardenas, E., W. M. Wu, M. B. Leigh, J. Carley, S. Carroll, T. Gentry, J. Luo, D. Watson, B. Gu, M. Ginder-Vogel, P. K. Kitanidis, P. M. Jardine, J. Zhou, C. S. Criddle, T. L. Marsh, and J. A. Tiedje. 2008. Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels. Applied And Environmental Microbiology 74:3718-3729.
  7. Chorover, J., S. Choi, P. Rotenberg, R. J. Serne, N. Rivera, C. Strepka, A. Thompson, K. T. Mueller, and P. A. O'Day. 2008. Silicon control of strontium and cesium partitioning in hydroxide-weathered sediments. Geochimica Et Cosmochimica Acta 72:2024-2047.
  8. Dick, G. J., J. W. Torpey, T. J. Beveridge, and B. A. Tebo. 2008. Direct identification of a bacterial Manganese(II) oxidase, the multicopper oxidase MnxG, from spores of several different marine Bacillus species. Applied And Environmental Microbiology 74:1527-1534.

  9. Dong, W. M., and S. C. Brooks. 2008. Formation of aqueous MgUO2(CO3)(3)(2-) complex and uranium anion exchange mechanism onto an exchange resin. Environmental Science & Technology 42:1979-1983.

  10. Francis, A. J., C. J. Dodge, and J. B. Gillow. 2008. Reductive dissolution of Pu(IV) by Clostridium sp under anaerobic conditions. Environmental Science & Technology 42:2355-2360.
  11. Fredrickson, JK; Zachara, JM. Electron transfer at the microbe-mineral interface: a grand challenge in biogeochemistry. GEOBIOLOGY, 6 (3): 245-253 JUN 2008
  12. Fredrickson, J. K., S. M. W. Li, E. K. Gaidamakova, V. Y. Matrosova, M. Zhai, H. M. Sulloway, J. C. Scholten, M. G. Brown, D. L. Balkwill, and M. J. Daly. 2008. Protein oxidation: key to bacterial desiccation resistance? Isme Journal 2:393-403.
  13. Fujita, Y., J. L. Taylor, T. L. T. Gresham, M. E. Delwiche, F. S. Colwell, T. L. McLing, L. M. Petzke, and R. W. Smith. 2008. Stimulation of microbial urea hydrolysis in groundwater to enhance calcite precipitation. Environmental Science & Technology 42:3025-3032.
  14. Gao, WM; Francis, AJ Reduction of uranium(VI) to uranium(IV) by clostridia APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 74 (14): 4580-4584 JUL 2008.

  15. Gentile, M. E., J. L. Nyman, and C. S. Criddle. 2007. Correlation of patterns of denitrification instability in replicated bioreactor communities with shifts in the relative abundance and the denitrification patterns of specific populations. Isme Journal 1:714-728.

  16. Gorby, Y; Mclean, J; Korenevsky, A; et al. Redox-reactive membrane vesicles produced by Shewanella. GEOBIOLOGY, 6 (3): 232-241 JUN 2008
  17. Hansel, C. M., S. Fendorf, P. M. Jardine, and C. A. Francis. 2008. Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile. Applied And Environmental Microbiology 74:1620-1633.
  18. Holmes, D. E., R. A. O'Neil, H. A. Vrionis, L. A. N'Guessan, I. Ortiz-Bernad, M. J. Larrahondo, L. A. Adams, J. A. Ward, J. S. Nicoll, K. P. Nevin, M. A. Chavan, J. P. Johnson, P. E. Long, and D. R. Lovley. 2007. Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments. Isme Journal 1:663-677.
  19. Hubbard, S. S., K. Williams, M. E. Conrad, B. Faybishenko, J. Peterson, J. S. Chen, P. Long, and T. Hazen. 2008. Geophysical monitoring of hydrological and biogeochemical transformations associated with Cr(VI) bioremediation. Environmental Science & Technology 42:3757-3765.
  20. Ilton, E. S., N. P. Qafoku, C. X. Liu, D. A. Moore, and J. M. Zachara. 2008. Advective removal of intraparticle uranium from contaminated Vadose zone sediments, Hanford, US. Environmental Science & Technology 42:1565-1571.
  21. Jang, JH; Dempsey, BA; Burgos, WD Reduction of U(VI) by Fe(II) in the presence of hydrous ferric oxide and hematite: Effects of solid transformation, surface coverage, and humic acid WATER RESEARCH, 42 (8-9): 2269-2277 APR 2008.

  22. Jeon, B. H., J. M. Zachara, C. X. Liu, R. Kukkadapu, and A. Dohnalkova. 2005. Abiotic Tc(VII) reduction by Fe(II). Geochimica Et Cosmochimica Acta 69:A368-A368.

  23. Kelly, S. D., K. M. Kemner, J. Carley, C. Criddle, P. M. Jardine, T. L. Marsh, D. Phillips, D. Watson, and W. M. Wu. 2008. Speciation of uranium in sediments before and after in situ biostimulation. Environmental Science & Technology 42:1558-1564.
  24. Kemner, KM. Hard X-ray micro(spectro)scopy: A powerful tool for the geomicrobiologists. GEOBIOLOGY, 6 (3): 270-277 JUN 2008
  25. Kemner, K. M. 2008. Hard X-ray micro(spectro)scopy: A powerful tool for the geomicrobiologists. Geobiology 6:270-277.
  26. Klonowska, A., M. E. Clark, S. B. Thieman, B. J. Giles, J. D. Wall, and M. W. Fields. 2008. Hexavalent chromium reduction in Desulfovibrio vulgaris Hildenborough causes transitory inhibition of sulfate reduction and cell growth. Applied Microbiology And Biotechnology 78:1007-1016.
  27. Klonowska, A., T. Heulin, and A. Vermeglio. 2005. Selenite and tellurite reduction by Shewanella oneidensis. Applied And Environmental Microbiology 71:5607-5609.
  28. Komlos, J., B. Mishra, A. Lanzirotti, S. C. B. Myneni, and P. R. Jaffe. 2008. Real-time speciation of uranium during active bioremediation and U(IV) reoxidation. Journal of Environmental Engineering-Asce 134:78-86.
  29. Lambot, S., A. Binley, E. Slob, and S. Hubbard. 2008. Ground penetrating radar in hydrogeophysics. Vadose Zone Journal 7:137-139.

  30. Li, L., C. I. Steefel, and L. Yang. 2008. Scale dependence of mineral dissolution rates within single pores and fractures. Geochimica Et Cosmochimica Acta 72:360-377.

  31. Lovley, DR. Extracellular electron transfer: wires, capacitors, iron lungs, and more. GEOBIOLOGY, 6 (3): 225-231 JUN 2008.
  32. Luo, J., W. M. Wu, J. Carley, M. N. Fienen, H. Cheng, D. Watson, C. S. Criddle, P. M. Jardine, and P. K. Kitanidis. 2008. Estimating first-order reaction rate coefficient for transport with nonequilibrium linear mass transfer in heterogeneous media. Journal Of Contaminant Hydrology 98:50-60.

  33. Marshall, M. J., A. E. Plymale, D. W. Kennedy, L. Shi, Z. M. Wang, S. B. Reed, A. C. Dohnalkova, C. J. Simonson, C. X. Liu, D. A. Saffarini, M. F. Romine, J. M. Zachara, A. S. Beliaev, and J. K. Fredrickson. 2008. Hydrogenase- and outer membrane c-type cytochrome-facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1. Environmental Microbiology 10:125-136.

  34. Marsili, E., H. Beyenal, L. Di Palma, C. Merli, A. Dohnalkova, J. E. Amonette, and Z. Lewandowski. 2007. Uranium immobilization by sulfate-reducing biofilms grown on hematite, dolomite, and calcite. Environmental Science & Technology 41:8349-8354.
  35. Mohanty, S. R., B. Kollah, D. B. Hedrick, A. D. Peacock, R. K. Kukkadapu, and E. E. Roden. 2008. Biogeochemical processes in ethanol stimulated uranium-contaminated suhsurface sediments. Environmental Science & Technology 42:4384-4390.
  36. N'Guessan, A. L., H. A. Vrionis, C. T. Resch, P. E. Long, and D. R. Lovley. 2008. Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction. Environmental Science & Technology 42:2999-3004.
  37. O'Neil, R. A., D. E. Holmes, M. V. Coppi, L. A. Adams, M. J. Larrahondo, J. E. Ward, K. P. Nevin, T. L. Woodard, H. A. Vrionis, A. L. N'Guessan, and D. R. Lovley. 2008. Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation. Environmental Microbiology 10:1218-1230.
  38. Peretyazhko, T., J. M. Zachara, S. M. Heald, B. H. Jeon, R. K. Kukkadapu, C. Liu, D. Moore, and C. T. Resch. 2008. Heterogeneous reduction of Tc(VII) by Fe(II) at the solid-water interface. Geochimica Et Cosmochimica Acta 72:1521-1539.
  39. Personna, Y. R., D. Ntarlagiannis, L. Slater, N. Yee, M. O'Brien, and S. Hubbard. 2008. Spectral induced polarization and electrodic potential monitoring of microbially mediated iron sulfide transformations. Journal of Geophysical Research-Biogeosciences 113.
  40. Phillips, D. H., B. Gu, D. B. Watson, and C. S. Parmele. 2008. Uranium removal from contaminated groundwater by synthetic resins. Water Research 42:260-268.
  41. Puzon, G. J., R. K. Tokala, H. Zhang, D. Yonge, B. M. Peyton, and L. Y. Xun. 2008. Mobility and recalcitrance of organo-chromium(III) complexes. Chemosphere 70:2054-2059.
  42. Rai, D; Moore, DA; Rosso, KM; et al. Environmental mobility of Pu(IV) in the presence of ethylenediaminetetraacetic acid: Myth or reality? JOURNAL OF SOLUTION CHEMISTRY, 37 (7): 957-986 JUL 2008
  43. Saini, G., and B. D. Wood. 2008. Metabolic uncoupling of Shewanella oneidensis MR-1, under the influence of excess substrate and 3,3 ',4 ',5-tetrachlorosalicylanilide (TCS). Biotechnology And Bioengineering 99:1352-1360.
  44. Sani, RK; Peyton, BM; Dohnalkova, A Comparison of uranium(VI) removal by Shewanella oneidensis MR-1 in flow and batch reactors WATER RESEARCH, 42 (12): 2993-3002 JUN 2008
  45. Shelobolina, ES; Vrionis, HA; Findlay, RH; et al. Geobacter uraniireducens sp nov., isolated from subsurface sediment undergoing uranium bioremediation, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 58: 1075-1078 Part 5 MAY 2008
  46. Soderholm, L., S. Skanthakumar, D. Gorman-Lewis, M. P. Jensen, and K. L. Nagy. 2008. Characterizing solution and solid-phase amorphous uranyl silicates. Geochimica Et Cosmochimica Acta 72:140-150.
  47. Spalding, B. P., and D. B. Watson. 2008. Passive sampling and analyses of common dissolved fixed gases in groundwater. Environmental Science & Technology 42:3766-3772.
  48. Tang, C. Y., Q. S. Fu, C. S. Criddle, and J. O. Leckie. 2007. Effect of flux (transmembrane pressure) and membrane properties on fouling and rejection of reverse osmosis and nanofiltration membranes treating perfluorooctane sulfonate containing wastewater. Environmental Science & Technology 41:2008-2014.
  49. Tartakovsky, AM; Redden, G; Lichtner, PC; et al. Mixing-induced precipitation: Experimental study and multiscale numerical analysis WATER RESOURCES RESEARCH, 44 (6): Art. No. W06S04 JUN 28 2008.
  50. Thompson, M. R., D. K. Thompson, and R. L. Hettich. 2008. Systematic assessment of the benefits and caveats in mining microbial post-translational modifications from shotgun proteomic data: The response of Shewanella oneidensis to chromate exposure. Journal of Proteome Research 7:648-658.
  51. Tokala, R. K., D. Yonge, G. J. Puzon, V. Sivaswarny, L. Xun, and B. M. Peyton. 2008. Subsurface mobility of organo-Cr(III) complexes formed during biological reduction of Cr(VI). Journal of Environmental Engineering-Asce 134:87-92.
  52. Tokunaga, T. K., J. M. Wan, Y. M. Kim, S. R. Sutton, M. Newville, A. Lanzirotti, and W. Rao. 2008. Real-time X-ray absorption spectroscopy of uranium, iron, and manganese in contaminated sediments during bioreduction. Environmental Science & Technology 42:2839-2844.
  53. Turick, C. E., A. S. Knox, C. L. Leverette, and Y. G. Kritzas. 2008. In situ uranium stabilization by microbial metabolites. Journal Of Environmental Radioactivity 99:890-899.
  54. Turick, C. E., F. Caccavo, and L. S. Tisa. 2008. Pyomelanin is produced by Shewanella algae BrY and affected by exogenous iron. Canadian Journal of Microbiology 54:334-339.
  55. Wan, J. M., T. K. Tokunaga, Y. M. Kim, Z. M. Wang, A. Lanzirotti, E. Saiz, and R. J. Serne. 2008. Effect of saline waste solution infiltration rates on uranium retention and spatial distribution in Hanford sediments. Environmental Science & Technology 42:1973-1978.
  56. Wellman, D. M., A. P. Gamerdinger, D. I. Kaplan, and R. J. Serne. 2008. Effect of particle-scale heterogeneity on Uranium(VI) transport in unsaturated porous media. Vadose Zone Journal 7:67-78.
  57. Wellman, D. M., J. N. Glovack, K. Parker, E. L. Richards, and E. M. Pierce. 2008. Sequestration and retention of uranium(VI) in the presence of hydroxylapatite under dynamic geochemical conditions. Environmental Chemistry 5:40-50.
  58. Wellman, D. M., E. M. Pierce, and M. M. Valenta. 2007. Efficacy of soluble sodium tripolyphosphate amendments for the in-situ immobilisation of uranium. Environmental Chemistry 4:293-300.
  59. Wu, L. Y., X. D. Liu, M. W. Fields, D. K. Thompson, C. E. Bagwell, J. M. Tiedje, T. C. Hazen, and J. Z. Zhou. 2008. Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness. Isme Journal 2:642-655.
  60. Yamamoto, S., H. Bluhm, K. Andersson, G. Ketteler, H. Ogasawara, M. Salmeron, and A. Nilsson. 2008. In situ x-ray photoelectron spectroscopy studies of water on metas and oxides at ambient conditions. Journal of Physics-Condensed Matter 20.
  61. Yoon, H; Zhang, CY; Werth, CJ; et al. Numerical simulation of water flow in three dimensional heterogeneous porous media observed in a magnetic resonance imaging experiment
    WATER RESOURCES RESEARCH, 44 (6): Art. No. W06405 JUN 5 2008.
  62. Zhang, F., G. T. Yeh, J. C. Parker, and P. M. Jardine. 2008. A reaction-based river/stream water quality model: Model development and numerical schemes. Journal of Hydrology 348:496-509.
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